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Drought impacts on microbial activity can alter soil carbon fate and lead to the loss of stored carbon to the atmosphere as CO₂and volatile organic compounds (VOCs). Here we examined drought impacts on carbon allocation by soil microbes in the Biosphere 2 artificial tropical rainforest by tracking¹³C from position-specific¹³C-pyruvate into CO₂and VOCs in parallel with multi-omics. During drought, efflux of¹³C-enriched acetate, acetone and C₄H₆O₂(diacetyl) increased. These changes represent increased production and buildup of intermediate metabolites driven by decreased carbon cycling efficiency. Simultaneously,¹³C-CO₂efflux decreased, driven by a decrease in microbial activity. However, the microbial carbon allocation to energy gain relative to biosynthesis was unchanged, signifying maintained energy demand for biosynthesis of VOCs and other drought-stress-induced pathways. Overall, while carbon loss to the atmosphere via CO₂decreased during drought, carbon loss via efflux of VOCs increased, indicating microbially induced shifts in soil carbon fate.

 

Interactions between Sphagnum (peat moss) and cyanobacteria play critical roles in terrestrial carbon and nitrogen cycling processes. Knowledge of the metabolites exchanged, the physiological processes involved, and the environmental conditions allowing the formation of symbiosis is important for a better understanding of the mechanisms underlying these interactions. In this study, we used a cross-feeding approach with spatially resolved metabolite profiling and metatranscriptomics to characterize the symbiosis between Sphagnum and Nostoc cyanobacteria. A pH gradient study revealed that the Sphagnum–Nostoc symbiosis was driven by pH, with mutualism occurring only at low pH. Metabolic cross-feeding studies along with spatially resolved matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) identified trehalose as the main carbohydrate source released by Sphagnum, which were depleted by Nostoc along with sulfur-containing choline-O-sulfate, taurine and sulfoacetate. In exchange, Nostoc increased exudation of purines and amino acids. Metatranscriptome analysis indicated that Sphagnum host defense was downregulated when in direct contact with the Nostoc symbiont, but not as a result of chemical contact alone. The observations in this study elucidated environmental, metabolic, and physiological underpinnings of the widespread plant–cyanobacterial symbioses with important implications for predicting carbon and nitrogen cycling in peatland ecosystems as well as the basis of general host-microbe interactions.

 

Abstract. A comprehensive set of measurements and calculated metricsdescribing physical, chemical, and biological conditions in the rivercorridor is presented. These data were collected in a catchment-wide,synoptic campaign in the H. J. Andrews ExperimentalForest (Cascade Mountains, Oregon, USA) in summer 2016 during low-dischargeconditions. Extensive characterization of 62 sites including surface water,hyporheic water, and streambed sediment was conducted spanning 1st- through5th-order reaches in the river network. The objective of the sample designand data acquisition was to generate a novel data set to support scaling ofriver corridor processes across varying flows and morphologic forms presentin a river network. The data are available at https://doi.org/10.4211/hs.f4484e0703f743c696c2e1f209abb842 (Ward, 2019). 

Abstract. Although most field and modeling studies of river corridorexchange have been conducted at scales ranging from tens to hundreds of meters,results of these studies are used to predict their ecological andhydrological influences at the scale of river networks. Further complicatingprediction, exchanges are expected to vary with hydrologic forcing and thelocal geomorphic setting. While we desire predictive power, we lack acomplete spatiotemporal relationship relating discharge to the variation ingeologic setting and hydrologic forcing that is expected across a riverbasin. Indeed, the conceptual model of Wondzell (2011) predicts systematicvariation in river corridor exchange as a function of (1) variation inbaseflow over time at a fixed location, (2) variation in discharge withlocation in the river network, and (3) local geomorphic setting. To testthis conceptual model we conducted more than 60 solute tracer studiesincluding a synoptic campaign in the 5th-order river network of the H. J. Andrews Experimental Forest (Oregon, USA) and replicate-in-time experimentsin four watersheds. We interpret the data using a series of metricsdescribing river corridor exchange and solute transport, testing forconsistent direction and magnitude of relationships relating these metricsto discharge and local geomorphic setting. We confirmed systematic decreasein river corridor exchange space through the river networks, from headwatersto the larger main stem. However, we did not find systematic variation withchanges in discharge through time or with local geomorphic setting. Whileinterpretation of our results is complicated by problems with the analyticalmethods, the results are sufficiently robust for us to conclude that space-for-timeand time-for-space substitutions are not appropriate in our study system.Finally, we suggest two strategies that will improve the interpretability oftracer test results and help the hyporheic community develop robust datasets that will enable comparisons across multiple sites and/or dischargeconditions. 

High‐resolution mass spectrometry (HRMS) has become a vital tool for dissolved organic matter (DOM) characterization. The upward trend in HRMS analysis of DOM presents challenges in data comparison and interpretation among laboratories operating instruments with differing performance and user operating conditions. It is therefore essential that the community establishes metric ranges and compositional trends for data comparison with reference samples so that data can be robustly compared among research groups. To this end, four identically prepared DOM samples were each measured by 16 laboratories, using 17 commercially purchased instruments, using positive‐ion and negative‐ion mode electrospray ionization (ESI) HRMS analyses. The instruments identified ~1000 common ions in both negative‐ and positive‐ion modes over a wide range ofm/zvalues and chemical space, as determined by van Krevelen diagrams. Calculated metrics of abundance‐weighted average indices (H/C, O/C, aromaticity, andm/z) of the commonly detected ions showed that hydrogen saturation and aromaticity were consistent for each reference sample across the instruments, while average mass and oxygenation were more affected by differences in instrument type and settings. In this paper we present 32 metric values for future benchmarking. The metric values were obtained for the four different parameters from four samples in two ionization modes and can be used in future work to evaluate the performance of HRMS instruments.